- Scientific Name
- Misgurnus anguillicaudatus
- Common Names
- dojo loach, golden dojo loach, Japanese weatherfish, oriental weatherloach, weather loach; oriental weatherfish; Cobitis anguillicaudata
- Bioproject
- PRJCA024750
- Biosample
- SAMC3481865
- Accession No.
- GWHERQI00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1184675
- GVM variations of the species
- -
- Submitter Organization
- college of fisheries, Huazhong Agricultural University
- Contact
- qingshan Li(1141869121@qq.com)
- Sequence author(s)
- qingshan Li
- Released Date
- 2024-04-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.16.1
- Sequencing & coverage
- PacBio 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Bing Sun, et al. Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus. Scientific data. 2024, 11(1): 1059.
Statistics of Genome Assembly
| Genome size (bp) | 1,150,906,516 |
| GC content | 38.06% |
| Chromosomes sequence No. | 25 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 22,892 | 22,892 |
| Total | 22,892 | 22,892 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,204 | 1,204 |
| chr10 | 803 | 803 |
| chr11 | 750 | 750 |
| chr12 | 900 | 900 |
| chr13 | 934 | 934 |
| chr14 | 837 | 837 |
| chr15 | 882 | 882 |
| chr16 | 766 | 766 |
| chr17 | 813 | 813 |
| chr18 | 788 | 788 |
| chr19 | 949 | 949 |
| chr2 | 1,216 | 1,216 |
| chr20 | 657 | 657 |
| chr21 | 756 | 756 |
| chr22 | 959 | 959 |
| chr23 | 810 | 810 |
| chr24 | 709 | 709 |
| chr25 | 834 | 834 |
| chr3 | 942 | 942 |
| chr4 | 1,222 | 1,222 |
| chr5 | 1,205 | 1,205 |
| chr6 | 1,055 | 1,055 |
| chr7 | 938 | 938 |
| chr8 | 1,012 | 1,012 |
| chr9 | 951 | 951 |
| Total | 22,892 | 22,892 |