- Scientific Name
- Citrus reticulata
- Common Names
- mandarin orange, tangerine; Citrus poonensis
- Bioproject
- PRJCA024652
- Biosample
- SAMC3478880
- Accession No.
- GWHERQK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- BGI-research, BGI
- Contact
- Yayu Wang, wangyayu@genomics.cn
- Sequence author(s)
- Yayu Wang
- Released Date
- 2024-04-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- juicer&3D-DNA v. v180922
- Sequencing & coverage
- Hi-C 100.0
- Download
- DNA
- Publication(s)
- Jiawen Wen, et al. An integrated multi-omics approach reveals polymethoxylated flavonoid biosynthesis in Citrus reticulata cv. Chachiensis. Nature communications. 2024, 15(1): 3991.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHERQK00000000 | - | Citrus reticulata | Draft genome in scaffold level | 2024-04-04 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 315,015,732 |
| GC content | 34.33% |
| Chromosomes sequence No. | 1 |
| Genome sequence No. | 89 |
| Maximum genome sequence length (bp) | 51,751,000 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 3,539,503 |
| Genome sequence N50 (bp) | 32,728,662 |
| Genome sequence N90 (bp) | 30,319,000 |