- Scientific Name
- Misgurnus anguillicaudatus
- Common Names
- dojo loach, golden dojo loach, Japanese weatherfish, oriental weatherloach, weather loach; oriental weatherfish; Cobitis anguillicaudata
- Bioproject
- PRJCA024750
- Biosample
- SAMC3481865
- Accession No.
- GWHERQL00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1184675
- GVM variations of the species
- -
- Submitter Organization
- college of fisheries, Huazhong Agricultural University
- Contact
- qingshan Li(1141869121@qq.com)
- Sequence author(s)
- qingshan Li
- Released Date
- 2024-04-04
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- PacBio 30.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Bing Sun, et al. Chromosome-scale and haplotype-resolved genome assembly of the autotetraploid Misgurnus anguillicaudatus. Scientific data. 2024, 11(1): 1059.
Statistics of Genome Assembly
| Genome size (bp) | 1,143,885,406 |
| GC content | 38.05% |
| Chromosomes sequence No. | 25 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 22,886 | 22,886 |
| Total | 22,886 | 22,886 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,230 | 1,230 |
| chr10 | 784 | 784 |
| chr11 | 819 | 819 |
| chr12 | 921 | 921 |
| chr13 | 954 | 954 |
| chr14 | 832 | 832 |
| chr15 | 819 | 819 |
| chr16 | 747 | 747 |
| chr17 | 824 | 824 |
| chr18 | 769 | 769 |
| chr19 | 918 | 918 |
| chr2 | 1,228 | 1,228 |
| chr20 | 677 | 677 |
| chr21 | 775 | 775 |
| chr22 | 930 | 930 |
| chr23 | 864 | 864 |
| chr24 | 674 | 674 |
| chr25 | 814 | 814 |
| chr3 | 973 | 973 |
| chr4 | 1,240 | 1,240 |
| chr5 | 1,140 | 1,140 |
| chr6 | 1,058 | 1,058 |
| chr7 | 920 | 920 |
| chr8 | 1,027 | 1,027 |
| chr9 | 949 | 949 |
| Total | 22,886 | 22,886 |