- Scientific Name
- Setaria italica
- Common Names
- foxtail millet; Chaetochloa italica, Panicum italicum, Pennisetum macrochaetum, Setaria viridis subsp. italica
- Bioproject
- PRJCA001872
- Biosample
- SAMC112905
- Accession No.
- GWHABGJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 25,727,368 (SNP), 4,277,814 (Indel)
- Submitter Organization
- Department of Plant Genetics and Breeding, China Agricultural University
- Contact
- Junpeng Shi, shijunpeng@cau.edu.cn
- Sequence author(s)
- Junpeng Shi
- Released Date
- 2019-10-29
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- Falcon v1.8.7
- Sequencing & coverage
- PacBio 110.0
- Download
- DNA
- Publication(s)
- Zhaozhao Dai, et al. High-throughput long paired-end sequencing of a Fosmid library by PacBio. Plant Methods. 2019, 15: 142.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABGJ00000000 | - | Yugu18 | Draft genome in contig level | 2019-10-29 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 407,498,960 |
| GC content | 46.20% |
| Contig sequence No. | 383 |
| Maximum contig sequence length (bp) | 12,402,310 |
| Minimum contig sequence length (bp) | 1,187 |
| Average contig sequence length (bp) | 1,063,966 |
| Contig N50 (bp) | 3,758,091 |
| Contig N90 (bp) | 1,018,699 |