- Scientific Name
- Mangifera indica
- Common Names
- mango;
- Bioproject
- PRJCA020898
- Biosample
- SAMC3141886
- Accession No.
- GWHESFJ00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Upendra Wijesundara(w.wijesundara@uq.edu.au)
- Sequence author(s)
- Upendra Wijesundara, Robert Henry, Agnelo Furtado, Ardy Masouleh, Natalie Dillon
- Released Date
- 2024-04-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 1
- Sequencing & coverage
- PacBio 204.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Upendra Wijesundara, et al. A chromosome-level genome of mango exclusively from long-read sequence data. The Plant Genome. 2024, p.e20441: 1- 13.
Statistics of Genome Assembly
| Genome size (bp) | 354,245,835 |
| GC content | 32.87% |
| Chromosomes sequence No. | 20 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 42,268 | 42,268 |
| Total | 42,268 | 42,268 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,338 | 3,338 |
| chr10 | 2,068 | 2,068 |
| chr11 | 2,228 | 2,228 |
| chr12 | 2,190 | 2,190 |
| chr13 | 1,699 | 1,699 |
| chr14 | 1,762 | 1,762 |
| chr15 | 1,292 | 1,292 |
| chr16 | 1,376 | 1,376 |
| chr17 | 1,509 | 1,509 |
| chr18 | 1,463 | 1,463 |
| chr19 | 1,407 | 1,407 |
| chr2 | 2,502 | 2,502 |
| chr20 | 1,253 | 1,253 |
| chr3 | 3,083 | 3,083 |
| chr4 | 2,733 | 2,733 |
| chr5 | 2,969 | 2,969 |
| chr6 | 2,160 | 2,160 |
| chr7 | 2,334 | 2,334 |
| chr8 | 2,595 | 2,595 |
| chr9 | 2,307 | 2,307 |
| Total | 42,268 | 42,268 |