- Scientific Name
- Mangifera indica
- Common Names
- mango;
- Bioproject
- PRJCA020898
- Biosample
- SAMC3141886
- Accession No.
- GWHESFK00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Crop Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Upendra Wijesundara(w.wijesundara@uq.edu.au)
- Sequence author(s)
- Upendra Wijesundara, Robert Henry, Agnelo Furtado, Ardy Masouleh, Natalie Dillon
- Released Date
- 2024-04-19
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HiFiasm 1
- Sequencing & coverage
- PacBio 204.0
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Upendra Wijesundara, et al. A chromosome-level genome of mango exclusively from long-read sequence data. The Plant Genome. 2024, p.e20441: 1- 13.
Statistics of Genome Assembly
| Genome size (bp) | 354,621,130 |
| GC content | 32.74% |
| Chromosomes sequence No. | 20 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 40,944 | 40,944 |
| Total | 40,944 | 40,944 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,138 | 3,138 |
| chr10 | 2,073 | 2,073 |
| chr11 | 1,836 | 1,836 |
| chr12 | 2,126 | 2,126 |
| chr13 | 1,700 | 1,700 |
| chr14 | 1,659 | 1,659 |
| chr15 | 1,481 | 1,481 |
| chr16 | 1,323 | 1,323 |
| chr17 | 1,391 | 1,391 |
| chr18 | 1,384 | 1,384 |
| chr19 | 1,443 | 1,443 |
| chr2 | 2,618 | 2,618 |
| chr20 | 1,233 | 1,233 |
| chr3 | 2,959 | 2,959 |
| chr4 | 2,674 | 2,674 |
| chr5 | 2,885 | 2,885 |
| chr6 | 2,048 | 2,048 |
| chr7 | 2,278 | 2,278 |
| chr8 | 2,529 | 2,529 |
| chr9 | 2,166 | 2,166 |
| Total | 40,944 | 40,944 |