- Scientific Name
- Malus micromalus
- Common Names
- Kaido crab apple; Malus x micromalus
- Bioproject
- PRJCA015452
- Biosample
- SAMC1150995
- Accession No.
- GWHCBEG00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute for Horticultural Plants, China Agricultural University
- Contact
- Wei Li(liwei0522898@163.com), Haochen Sun(fei_chen980615@163.com)
- Sequence author(s)
- Wei Li, Chong Chu, Taikui Zhang, Haochen Sun, Shiyao Wang, Zeyuan Liu, Zijun Wang, Zhenhai Han
- Released Date
- 2025-02-10
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15.2_r334
- Sequencing & coverage
- PacBio 44.99
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.
Statistics of Genome Assembly
| Genome size (bp) | 673,659,573 |
| GC content | 38.37% |
| Contig sequence No. | 682 |
| Maximum contig sequence length (bp) | 42,374,219 |
| Minimum contig sequence length (bp) | 10,387 |
| Average contig sequence length (bp) | 987,771 |
| Contig N50 (bp) | 26,341,393 |
| Contig N90 (bp) | 8,598,229 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 48,851 | 48,851 |