- Scientific Name
- Oryza longistaminata
- Common Names
- long-staminate rice, red rice;
- Bioproject
- PRJCA024131
- Biosample
- SAMC3434690
- Accession No.
- GWHESHP00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1107714
- GVM variations of the species
- -
- Submitter Organization
- National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology
- Contact
- Han Bin(bhan@ncgr.ac.cn)
- Sequence author(s)
- Han Bin
- Released Date
- 2025-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.0
- Sequencing & coverage
- HiFi 21.7
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Dongling Guo, et al. A pangenome reference of wild and cultivated rice. Nature. 2025, 642(8068): 662-671.
Statistics of Genome Assembly
| Genome size (bp) | 342,963,518 |
| GC content | 43.27% |
| Genome sequence No. | 87 |
| Maximum genome sequence length (bp) | 38,418,018 |
| Minimum genome sequence length (bp) | 16,842 |
| Average genome sequence length (bp) | 3,942,109 |
| Genome sequence N50 (bp) | 29,059,207 |
| Genome sequence N90 (bp) | 22,755,442 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Total | 38,324 | 235 | 38,559 |