- Scientific Name
- Oryza rufipogon
- Common Names
- common wild rice, red rice;
- Bioproject
- PRJCA024131
- Biosample
- SAMC3434738
- Accession No.
- GWHESMP00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1107745
- GVM variations of the species
- -
- Submitter Organization
- National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology
- Contact
- Han Bin, bhan@ncgr.ac.cn
- Sequence author(s)
- Han Bin
- Released Date
- 2025-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Necat 20200803
Racon 1.0.0
NextPolish 1.0.2 - Sequencing & coverage
- ONT 88.3
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Dongling Guo, et al. A pangenome reference of wild and cultivated rice. Nature. 2025, 642(8068): 662-671.
Statistics of Genome Assembly
| Genome size (bp) | 397,191,137 |
| GC content | 43.62% |
| Genome sequence No. | 65 |
| Maximum genome sequence length (bp) | 44,161,857 |
| Minimum genome sequence length (bp) | 3,368 |
| Average genome sequence length (bp) | 6,110,633 |
| Genome sequence N50 (bp) | 32,477,418 |
| Genome sequence N90 (bp) | 26,107,042 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Total | 39,325 | 294 | 39,619 |