- Scientific Name
- Oryza rufipogon
- Common Names
- common wild rice, red rice;
- Bioproject
- PRJCA024131
- Biosample
- SAMC3434772
- Accession No.
- GWHESMR00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR1107779
- GVM variations of the species
- -
- Submitter Organization
- National Center for Gene Research, CAS Center for Excellence in Molecular Plant Sciences / Institute of Plant Physiology and Ecology
- Contact
- Han Bin, bhan@ncgr.ac.cn
- Sequence author(s)
- Han Bin
- Released Date
- 2025-02-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- NextDenovo 2.1
Racon 1.0.0
NextPolish 1.0.2 - Sequencing & coverage
- ONT 77.2
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Dongling Guo, et al. A pangenome reference of wild and cultivated rice. Nature. 2025, 642(8068): 662-671.
Statistics of Genome Assembly
| Genome size (bp) | 413,103,060 |
| GC content | 43.80% |
| Genome sequence No. | 77 |
| Maximum genome sequence length (bp) | 45,549,456 |
| Minimum genome sequence length (bp) | 37,498 |
| Average genome sequence length (bp) | 5,364,975 |
| Genome sequence N50 (bp) | 33,346,557 |
| Genome sequence N90 (bp) | 25,978,614 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Total | 39,224 | 565 | 39,789 |