- Scientific Name
- Malus fusca
- Common Names
- Oregon crabapple;
- Bioproject
- PRJCA015452
- Biosample
- SAMC1150991
- Accession No.
- GWHCAXL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute for Horticultural Plants, China Agricultural University
- Contact
- Wei Li, liwei0522898@163.com
- Sequence author(s)
- Wei Li, Chong Chu, Taikui Zhang, Haochen Sun, Shiyao Wang, Zeyuan Liu, Zijun Wang, Zhenhai Han
- Released Date
- 2025-02-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.15.2_r334
- Sequencing & coverage
- PacBio 41.38
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Wei Li, et al. Pan-genome analysis reveals the evolution and diversity of Malus. Nature Genetics. 2025, 57(5): 1274-1286.
Statistics of Genome Assembly
| Genome size (bp) | 652,510,165 |
| GC content | 38.26% |
| Scaffold sequence No. | 621 |
| Maximum scaffold sequence length (bp) | 46,772,240 |
| Minimum scaffold sequence length (bp) | 11,397 |
| Average scaffold sequence length (bp) | 1,050,741 |
| Scaffold N50 (bp) | 28,243,219 |
| Scaffold N90 (bp) | 5,031,543 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 47,675 | 47,675 |