- Scientific Name
- Setaria italica
- Common Names
- foxtail millet; Chaetochloa italica, Panicum italicum, Pennisetum macrochaetum, Setaria viridis subsp. italica
- Bioproject
- PRJCA001876
- Biosample
- SAMC113349
- Accession No.
- GWHABGL00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 25,727,368 (SNP), 4,277,814 (Indel)
- Submitter Organization
- Department of Plant Genetics and Breeding, China Agricultural University
- Contact
- Junpeng Shi, shijunpeng@cau.edu.cn
- Sequence author(s)
- Junpeng Shi
- Released Date
- 2019-11-06
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome
- Assembly method
- HERA V1
- Sequencing & coverage
- PacBio 116.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 412,048,376 |
| GC content | 46.20% |
| Genome sequence No. | 98 |
| Maximum genome sequence length (bp) | 58,763,337 |
| Minimum genome sequence length (bp) | 15,296 |
| Average genome sequence length (bp) | 4,204,575 |
| Genome sequence N50 (bp) | 48,994,982 |
| Genome sequence N90 (bp) | 36,604,727 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 47,012 | 47,012 |