- Scientific Name
- Solanum lycopersicum
- Common Names
- tomato; Lycopersicon esculentum, Lycopersicon esculentum var. esculentum, Solanum esculentum, Solanum lycopersicum var. humboldtii
- Bioproject
- PRJCA026448
- Biosample
- SAMC3759280
- Accession No.
- GWHESXO00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 26,938,825 (SNP), 3,724,480 (Indel)
- Submitter Organization
- school of life science, East China Normal University
- Contact
- Yina Jiang, ynjiang@bio.ecnu.edu.cn
- Sequence author(s)
- Shuangshuang Wang, Lei Lu, Min Xu, Jian Jiang, Xiaofeng Wang, Yao Zheng, Yitao Liang, Tianqi Zhang, Minghui Qin, Pinkuan Zhu, Ling Xu
- Released Date
- 2024-06-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.19.8
ALLHIC v0.9.13 - Sequencing & coverage
- PacBio Sequel II 93.0
Illumina NovaSeq 6000 256.1
High-through chromosome conformation capture 130.1 - Download
- DNA
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHESXO00000000.1 | - | MicroTom | Draft genome in chromosome level | 2024-06-12 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 815,683,187 |
| GC content | 34.79% |
| Chromosomes sequence No. | 6 |
| Genome sequence No. | 12 |
| Maximum genome sequence length (bp) | 97,267,057 |
| Minimum genome sequence length (bp) | 52,467,898 |
| Average genome sequence length (bp) | 67,973,599 |
| Genome sequence N50 (bp) | 68,327,771 |
| Genome sequence N90 (bp) | 52,521,946 |