- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA006276
- Biosample
- SAMC447781
- Accession No.
- GWHESSX00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR657052
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture & Forestry Sciences, Huazhong Agricultural University
- Contact
- weiwei wen, wwwen@mail.hzau.edu.cn
- Sequence author(s)
- Minghui Meng
- Released Date
- 2024-06-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.16.1
- Sequencing & coverage
- PacBio 39
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Arslan Tariq, et al. In depth exploration of the genomic diversity in tea varieties based on a newly constructed pangenome of Camellia sinensis. The plant Journal. 2024.
Statistics of Genome Assembly
| Genome size (bp) | 3,062,322,709 |
| GC content | 38.66% |
| Genome sequence No. | 550 |
| Maximum genome sequence length (bp) | 252,377,257 |
| Minimum genome sequence length (bp) | 3,241 |
| Average genome sequence length (bp) | 5,567,859 |
| Genome sequence N50 (bp) | 211,849,564 |
| Genome sequence N90 (bp) | 156,206,181 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 41,805 | 41,805 |