- Scientific Name
- Klebsiella pneumoniae
- Common Names
- Bacillus pneumoniae, Bacterium pneumoniae crouposae, Hyalococcus pneumoniae, 'Klebsiella aerogenes' (Kruse) Taylor et al. 1956, Klebsiella pneumoniae aerogenes
- Bioproject
- PRJCA025410
- Biosample
- SAMC3808444
- Accession No.
- GWHETER00000000.1
- GWH reannotation accession
- GWHRA_ETER00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Department of computational biology, Fudan University
- Contact
- Ning Jiang(ningjiang@fudan.edu.cn)
- Sequence author(s)
- Tongqing Wei
- Released Date
- 2024-11-22
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes 3.15.2
Unicycler v3 - Sequencing & coverage
- Illumina HiSeq 6000 150
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- Tongqing Wei, et al. DeepPBI-KG: a deep learning method for the prediction of phage-bacteria interactions based on key genes. Briefings in bioinformatics. 2024, 25(6).
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHETER00000000.1 | GWHRA_ETER00000000.1 | R54 | Draft genome in contig level | 2024-11-22 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,768,319 |
| GC content | 56.89% |
| Contig sequence No. | 103 |
| Maximum contig sequence length (bp) | 591,081 |
| Minimum contig sequence length (bp) | 203 |
| Average contig sequence length (bp) | 56,003 |
| Contig N50 (bp) | 190,545 |
| Contig N90 (bp) | 67,426 |
Statistics of Genome Assembly
| Genome size (bp) | 5,768,319 |
| GC content | 56.89% |
| Contig sequence No. | 103 |
| Maximum contig sequence length (bp) | 591,081 |
| Minimum contig sequence length (bp) | 203 |
| Average contig sequence length (bp) | 56,003 |
| Contig N50 (bp) | 190,545 |
| Contig N90 (bp) | 67,426 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,423 | 70 | 7 | 6 | 153 | 127 | 5,786 |