- Scientific Name
- Lobularia maritima
- Common Names
- sweet alyssum; Alyssum maritimum
- Bioproject
- PRJCA027303
- Biosample
- SAMC3966023
- Accession No.
- GWHETTI00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1340611
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Sichuan University
- Contact
- Wenjie Yang, chuckxxy@163.com
- Sequence author(s)
- Wenjie Yang
- Released Date
- 2025-02-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.19.5-r587
YaSH v1.2a.1 - Sequencing & coverage
- PacBio HiFi 154
HiC 84 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 284,305,991 |
| GC content | 37.03% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 736 |
| Maximum genome sequence length (bp) | 22,389,901 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 386,285 |
| Genome sequence N50 (bp) | 20,162,145 |
| Genome sequence N90 (bp) | 110,287 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,603 | 34,603 |
| Others | 1,321 | 1,321 |
| Total | 35,924 | 35,924 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,178 | 3,178 |
| chr10 | 3,126 | 3,126 |
| chr11 | 3,222 | 3,222 |
| chr12 | 3,077 | 3,077 |
| chr2 | 2,521 | 2,521 |
| chr3 | 2,900 | 2,900 |
| chr4 | 2,552 | 2,552 |
| chr5 | 3,396 | 3,396 |
| chr6 | 2,343 | 2,343 |
| chr7 | 2,930 | 2,930 |
| chr8 | 2,673 | 2,673 |
| chr9 | 2,685 | 2,685 |
| Others | 1,321 | 1,321 |
| Total | 35,924 | 35,924 |