- Scientific Name
- Cinchona calisaya
- Common Names
- quinine, yellowbark; Cinchona ledgeriana
- Bioproject
- PRJCA027622
- Biosample
- SAMC3982834
- Accession No.
- GWHEUDY00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1223644
- GVM variations of the species
- -
- Submitter Organization
- College of life sciences, Hebei University
- Contact
- Cailian Du, 747386568@qq.com
- Sequence author(s)
- Cailian Du
- Released Date
- 2024-07-22
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU v2
hifiasm 0.16.1 - Sequencing & coverage
- PacBio 59
DNBSEQ-T7 143
Illumina HiSeq 2000 191 - Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Cailian Du, et al. A near-complete genome assembly of Cinchona calisaya. Scientific data. 2025, 12(1): 122.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHEUDY00000000.1 | - | C_cal | Draft genome in chromosome level | 2024-07-22 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 869,932,639 |
| GC content | 33.35% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 73 |
| Maximum genome sequence length (bp) | 67,728,815 |
| Minimum genome sequence length (bp) | 6,921 |
| Average genome sequence length (bp) | 11,916,885 |
| Genome sequence N50 (bp) | 59,172,711 |
| Genome sequence N90 (bp) | 35,987,115 |