- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA028846
- Biosample
- SAMC4053276
- Accession No.
- GWHFAJM00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, Northwest A&F University
- Contact
- Pengjie Wang, wpjtea@163.com
- Sequence author(s)
- Pengjie Wang
- Released Date
- 2024-08-17
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.19.5
- Sequencing & coverage
- PacBio HiFi 43
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 3,114,023,889 |
| GC content | 38.87% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 863 |
| Maximum genome sequence length (bp) | 258,075,012 |
| Minimum genome sequence length (bp) | 10,423 |
| Average genome sequence length (bp) | 3,608,371 |
| Genome sequence N50 (bp) | 200,087,206 |
| Genome sequence N90 (bp) | 151,314,229 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 52,175 | 52,175 |
| Others | 1,964 | 1,964 |
| Total | 54,139 | 54,139 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,987 | 4,987 |
| chr10 | 2,816 | 2,816 |
| chr11 | 2,581 | 2,581 |
| chr12 | 2,759 | 2,759 |
| chr13 | 2,796 | 2,796 |
| chr14 | 2,961 | 2,961 |
| chr15 | 2,274 | 2,274 |
| chr2 | 4,195 | 4,195 |
| chr3 | 4,141 | 4,141 |
| chr4 | 4,660 | 4,660 |
| chr5 | 3,981 | 3,981 |
| chr6 | 4,039 | 4,039 |
| chr7 | 3,549 | 3,549 |
| chr8 | 3,052 | 3,052 |
| chr9 | 3,384 | 3,384 |
| Others | 1,964 | 1,964 |
| Total | 54,139 | 54,139 |