- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA028918
- Biosample
- SAMC4058325
- Accession No.
- GWHFAJR00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Horticulture, Northwest A&F University
- Contact
- Pengjie Wang, wpjtea@163.com
- Sequence author(s)
- Pengjie Wang
- Released Date
- 2024-08-18
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.19.5
- Sequencing & coverage
- PacBio HiFi 43
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 3,103,074,282 |
| GC content | 38.90% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 381 |
| Maximum genome sequence length (bp) | 256,985,930 |
| Minimum genome sequence length (bp) | 13,920 |
| Average genome sequence length (bp) | 8,144,552 |
| Genome sequence N50 (bp) | 200,298,885 |
| Genome sequence N90 (bp) | 144,591,207 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 54,995 | 54,995 |
| Others | 1,414 | 1,414 |
| Total | 56,409 | 56,409 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,931 | 4,931 |
| chr10 | 3,395 | 3,395 |
| chr11 | 2,834 | 2,834 |
| chr12 | 2,894 | 2,894 |
| chr13 | 2,989 | 2,989 |
| chr14 | 3,171 | 3,171 |
| chr15 | 2,481 | 2,481 |
| chr2 | 4,186 | 4,186 |
| chr3 | 4,344 | 4,344 |
| chr4 | 4,557 | 4,557 |
| chr5 | 3,858 | 3,858 |
| chr6 | 4,331 | 4,331 |
| chr7 | 3,762 | 3,762 |
| chr8 | 3,366 | 3,366 |
| chr9 | 3,896 | 3,896 |
| Others | 1,414 | 1,414 |
| Total | 56,409 | 56,409 |