- Scientific Name
- Azadirachta indica
- Common Names
- Indian-lilac, margosa, neem, neem tree; Melia azadirachta
- Bioproject
- PRJCA030181
- Biosample
- SAMC4134329
- Accession No.
- GWHFDPZ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1299335
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences
- Contact
- zhennan wang(znwang@icmm.ac.cn), caixia wang(cxwang@icmm.ac.cn)
- Sequence author(s)
- caixia wang
- Released Date
- 2024-09-17
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.19.8
- Sequencing & coverage
- PacBio 62
Nanopore 172
Illumina 244 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 233,205,482 |
| GC content | 32.52% |
| Chromosomes sequence No. | 14 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 28,215 | 28,215 |
| Total | 28,215 | 28,215 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr12159986 | 1,522 | 1,522 |
| chr13346191 | 1,676 | 1,676 |
| chr14123197 | 1,556 | 1,556 |
| chr14154833 | 1,764 | 1,764 |
| chr15245915 | 1,754 | 1,754 |
| chr15556656 | 1,879 | 1,879 |
| chr15839306 | 1,765 | 1,765 |
| chr15894754 | 2,068 | 2,068 |
| chr16676142 | 2,039 | 2,039 |
| chr18634742 | 2,073 | 2,073 |
| chr19602024 | 1,606 | 1,606 |
| chr20004070 | 2,475 | 2,475 |
| chr20321467 | 2,750 | 2,750 |
| chr21646199 | 3,288 | 3,288 |
| Total | 28,215 | 28,215 |