- Scientific Name
- Rosa rugosa
- Common Names
- Japanese rose, Turkestan rose;
- Bioproject
- PRJCA023549
- Biosample
- SAMC3370298
- Accession No.
- GWHFFMS00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of horticulture and forestry sciences, Huazhong Agricultural University
- Contact
- Junzhong Shang(shangjz1618@outlook.com)
- Sequence author(s)
- Junzhong Shang
- Released Date
- 2024-10-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- FALCON v0.2.2
- Sequencing & coverage
- PacBio 262.9
Illumina NovaSeq 6000 57.46
Binano 378.9 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 449,993,817 |
| GC content | 39.13% |
| Genome sequence No. | 246 |
| Maximum genome sequence length (bp) | 81,547,219 |
| Minimum genome sequence length (bp) | 1,613 |
| Average genome sequence length (bp) | 1,829,243 |
| Genome sequence N50 (bp) | 59,479,796 |
| Genome sequence N90 (bp) | 45,368,415 |
Annotation of Whole Genome Assembly
| Pseudogene | Total | |
|---|---|---|
| Total | 42,204 | 42,204 |