- Scientific Name
- Rhodiola kirilowii
- Common Names
- Sedum kirilowii
- Bioproject
- PRJCA031461
- Biosample
- SAMC4281548
- Accession No.
- GWHFGNY00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Science and Engineering, Southwest University of Science and Technology
- Contact
- Chongjing Xia(chongjing.xia@swust.edu.cn)
- Sequence author(s)
- Chongjing Xia
- Released Date
- 2024-10-25
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- MaSuRCA v4.0.7
3D-DNA v180922 - Sequencing & coverage
- Illumina 41
Hi-C 84
HiFi 125 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Jianbo Zhang, et al. Chromosome-level genome and annotation of the tetraploid Rhodiola kirilowii. Scientific data. 2025, 12(1): 620.0.
Statistics of Genome Assembly
| Genome size (bp) | 1,927,031,665 |
| GC content | 40.31% |
| Chromosomes sequence No. | 41 |
| Genome sequence No. | 517 |
| Maximum genome sequence length (bp) | 83,179,687 |
| Minimum genome sequence length (bp) | 5,000 |
| Average genome sequence length (bp) | 3,727,334 |
| Genome sequence N50 (bp) | 46,039,642 |
| Genome sequence N90 (bp) | 37,142,693 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 126,509 | 126,509 |
| Others | 1,528 | 1,528 |
| Total | 128,037 | 128,037 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,604 | 2,604 |
| chr10 | 2,647 | 2,647 |
| chr11 | 2,884 | 2,884 |
| chr12 | 2,855 | 2,855 |
| chr13 | 3,400 | 3,400 |
| chr14 | 3,086 | 3,086 |
| chr15 | 3,171 | 3,171 |
| chr16 | 3,130 | 3,130 |
| chr17 | 2,747 | 2,747 |
| chr18 | 2,932 | 2,932 |
| chr19 | 2,990 | 2,990 |
| chr2 | 2,246 | 2,246 |
| chr20 | 3,843 | 3,843 |
| chr21 | 3,276 | 3,276 |
| chr22 | 2,739 | 2,739 |
| chr23 | 2,886 | 2,886 |
| chr24 | 3,090 | 3,090 |
| chr25 | 4,543 | 4,543 |
| chr26 | 4,174 | 4,174 |
| chr27 | 2,696 | 2,696 |
| chr28 | 2,180 | 2,180 |
| chr29 | 3,316 | 3,316 |
| chr3 | 2,795 | 2,795 |
| chr30 | 3,398 | 3,398 |
| chr31 | 3,908 | 3,908 |
| chr32 | 3,352 | 3,352 |
| chr33 | 2,209 | 2,209 |
| chr34 | 2,404 | 2,404 |
| chr35 | 2,349 | 2,349 |
| chr36 | 3,015 | 3,015 |
| chr37 | 3,258 | 3,258 |
| chr38 | 2,974 | 2,974 |
| chr39 | 2,655 | 2,655 |
| chr4 | 3,144 | 3,144 |
| chr40 | 3,946 | 3,946 |
| chr41 | 4,179 | 4,179 |
| chr5 | 3,255 | 3,255 |
| chr6 | 3,149 | 3,149 |
| chr7 | 3,160 | 3,160 |
| chr8 | 2,948 | 2,948 |
| chr9 | 2,976 | 2,976 |
| Others | 1,528 | 1,528 |
| Total | 128,037 | 128,037 |