- Scientific Name
- Juglans regia
- Common Names
- English walnut;
- Bioproject
- PRJCA002070
- Biosample
- SAMC126062
- Accession No.
- GWHABJO00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 16,776,963 (SNP), 0 (Indel)
- Submitter Organization
- College of Life Sciences, Shanghai Normal University
- Contact
- Dong Pei, pei.dong@caf.ac.cn
- Sequence author(s)
- Dong Pei, Wenting Zhang
- Released Date
- 2020-03-02
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon 2.0
- Sequencing & coverage
- PacBio 100.0
- Download
- DNA
- Publication(s)
- Junpei Zhang, et al. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplication. Plant Biotechnology Journal. 2020, 18(9): 1848-1850.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABJO00000000 | - | Jregia_v1.0 | Draft genome in chromosome level | 2020-03-02 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 540,793,986 |
| GC content | 36.09% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 16 |
| Maximum genome sequence length (bp) | 51,839,233 |
| Minimum genome sequence length (bp) | 20,184,194 |
| Average genome sequence length (bp) | 33,799,624 |
| Genome sequence N50 (bp) | 36,874,183 |
| Genome sequence N90 (bp) | 25,709,904 |