Scientific Name
Camellia sinensis
Common Names
black tea; Thea sinensis
Bioproject
PRJCA002071
Biosample
SAMC126111
Accession No.
GWHAMJR00000000
GWH reannotation accession
-
GSA raw reads
CRR130326
GVM variations of the species
-
Submitter Organization
college of agriculture, South China Agricultural University
Contact
Wei Li, liweisdau@126.com
Sequence author(s)
Wei Li
Released Date
2020-06-01
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Falcon version 0.3.0
Sequencing & coverage
PacBio 128.0
Download
DNA GFF RNA Protein
Publication(s)
Qun-jie Zhang. The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons to Drive Genome Size Evolution. Molecular Plant. 2020.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAMJR00000000 - by11 Draft genome in chromosome level 2020-06-01 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 2,920,323,113
GC content 38.24%
Chromosomes sequence No. 15
Genome sequence No. 3,783
Maximum genome sequence length (bp) 253,457,600
Minimum genome sequence length (bp) 200
Average genome sequence length (bp) 771,960
Genome sequence N50 (bp) 195,678,510
Genome sequence N90 (bp) 130,653,490
Annotation of Whole Genome Assembly
Protein Total
Chromosome 39,898 39,898
Others 910 910
Total 40,808 40,808
Annotation Details
ChrID Protein Total
chr1 4,006 4,006
chr10 2,354 2,354
chr11 2,223 2,223
chr12 1,842 1,842
chr13 2,448 2,448
chr14 1,949 1,949
chr15 1,747 1,747
chr2 3,184 3,184
chr3 3,715 3,715
chr4 2,572 2,572
chr5 2,198 2,198
chr6 3,189 3,189
chr7 3,006 3,006
chr8 2,781 2,781
chr9 2,684 2,684
Others 910 910
Total 40,808 40,808