- Scientific Name
- Camellia sinensis
- Common Names
- black tea; Thea sinensis
- Bioproject
- PRJCA002071
- Biosample
- SAMC126111
- Accession No.
- GWHAMJR00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR130326
- GVM variations of the species
- -
- Submitter Organization
- college of agriculture, South China Agricultural University
- Contact
- Wei Li, liweisdau@126.com
- Sequence author(s)
- Wei Li
- Released Date
- 2020-06-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon version 0.3.0
- Sequencing & coverage
- PacBio 128.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Qun-jie Zhang. The Chromosome-Level Reference Genome of Tea Tree Unveils Recent Bursts of Non-autonomous LTR Retrotransposons to Drive Genome Size Evolution. Molecular Plant. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 2,920,323,113 |
| GC content | 38.24% |
| Chromosomes sequence No. | 15 |
| Genome sequence No. | 3,783 |
| Maximum genome sequence length (bp) | 253,457,600 |
| Minimum genome sequence length (bp) | 200 |
| Average genome sequence length (bp) | 771,960 |
| Genome sequence N50 (bp) | 195,678,510 |
| Genome sequence N90 (bp) | 130,653,490 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 39,898 | 39,898 |
| Others | 910 | 910 |
| Total | 40,808 | 40,808 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,006 | 4,006 |
| chr10 | 2,354 | 2,354 |
| chr11 | 2,223 | 2,223 |
| chr12 | 1,842 | 1,842 |
| chr13 | 2,448 | 2,448 |
| chr14 | 1,949 | 1,949 |
| chr15 | 1,747 | 1,747 |
| chr2 | 3,184 | 3,184 |
| chr3 | 3,715 | 3,715 |
| chr4 | 2,572 | 2,572 |
| chr5 | 2,198 | 2,198 |
| chr6 | 3,189 | 3,189 |
| chr7 | 3,006 | 3,006 |
| chr8 | 2,781 | 2,781 |
| chr9 | 2,684 | 2,684 |
| Others | 910 | 910 |
| Total | 40,808 | 40,808 |