- Scientific Name
- Limosilactobacillus reuteri
- Common Names
- Lactobacillus fermentum biotype II, Lactobacillus fermentum subsp. reuteri, Lactobacillus reuteri
- Bioproject
- PRJCA033409
- Biosample
- SAMC4443135
- Accession No.
- GWHFIEK00000000.1
- GWH reannotation accession
- GWHRA_FIEK00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Animal Sciences, Zhejiang University
- Contact
- Haifeng Wang, haifengwang@zju.edu.cn
- Sequence author(s)
- Yanfei Ma
- Released Date
- 2024-12-12
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Unicycler v.0.5.1
- Sequencing & coverage
- PacBio 2384
- Download
- DNA GFF RNA CDS Protein Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFIEK00000000.1 | GWHRA_FIEK00000000.1 | Lactobacillus_reuteri_ZJ617 | Complete genome | 2024-12-12 |
DNA
GFF
RNA
CDS
Protein
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,695,786 |
| GC content | 38.33% |
| Chromosomes sequence No. | 1 |
| Plasmids sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Others | Total | |
|---|---|---|---|---|---|
| Chromosome | 2,530 | 69 | 18 | 1 | 2,618 |
| Plasmid | 156 | 0 | 0 | 0 | 156 |
| Total | 2,686 | 69 | 18 | 1 | 2,774 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | Others | Total |
|---|---|---|---|---|---|
| chr1 | 2,530 | 69 | 18 | 1 | 2,618 |
| p1 | 138 | 0 | 0 | 0 | 138 |
| p2 | 18 | 0 | 0 | 0 | 18 |
| Total | 2,686 | 69 | 18 | 1 | 2,774 |
Statistics of Genome Assembly
| Genome size (bp) | 2,695,786 |
| GC content | 38.33% |
| Chromosomes sequence No. | 1 |
| Plasmids sequence No. | 2 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 2,410 | 70 | 18 | 78 | 32 | 2,608 |