- Scientific Name
- Brassica juncea
- Common Names
- brown mustard, Indian mustard;
- Bioproject
- PRJCA030880
- Biosample
- SAMC4179676
- Accession No.
- GWHFIKA00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Bioinformatics, Hunan Agricultural University
- Contact
- Lunwen Qian(qianlwhnau@126.com)
- Sequence author(s)
- Lunwen Qian
- Released Date
- 2025-01-10
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.3
NextDenovo v2.5.0
Verkko 1.4 - Sequencing & coverage
- PacBio 87.49
Nanopore 57.59
Hi-c 185.44 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 981,817,153 |
| GC content | 37.70% |
| Chromosomes sequence No. | 18 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 84,662 | 84,662 |
| Total | 84,662 | 84,662 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrA01 | 4,517 | 4,517 |
| chrA02 | 4,095 | 4,095 |
| chrA03 | 5,714 | 5,714 |
| chrA04 | 2,746 | 2,746 |
| chrA05 | 3,706 | 3,706 |
| chrA06 | 3,895 | 3,895 |
| chrA07 | 3,633 | 3,633 |
| chrA08 | 3,037 | 3,037 |
| chrA09 | 5,634 | 5,634 |
| chrA10 | 2,861 | 2,861 |
| chrB01 | 4,822 | 4,822 |
| chrB02 | 7,281 | 7,281 |
| chrB03 | 5,620 | 5,620 |
| chrB04 | 5,013 | 5,013 |
| chrB05 | 5,999 | 5,999 |
| chrB06 | 5,464 | 5,464 |
| chrB07 | 4,804 | 4,804 |
| chrB08 | 5,821 | 5,821 |
| Total | 84,662 | 84,662 |