- Scientific Name
- Rehmannia chingii
- Common Names
- -
- Bioproject
- PRJCA032868
- Biosample
- SAMC4432956
- Accession No.
- GWHFIKC00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1401605
- GVM variations of the species
- -
- Submitter Organization
- College of Agronomy, College of Agronomy
- Contact
- Yuan Yuan, y_yuan0732@163.com
- Sequence author(s)
- Fengqing Wang
- Released Date
- 2025-05-31
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.8
- Sequencing & coverage
- Illumina 106.49
PacBio 64.963
HiC 11.42
Nanopore 100.06 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- Fengqing Wang, et al. Analysis of the Rehmannia chingii geneome identifies RcCYP72H7 as an epoxidase in iridoid glycoside biosynthesis. Nature Communications. 2025, 16(1): 6035.
Statistics of Genome Assembly
| Genome size (bp) | 1,227,008,630 |
| GC content | 37.27% |
| Chromosomes sequence No. | 14 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 26,425 | 26,425 |
| Others | 2,585 | 2,585 |
| Total | 29,010 | 29,010 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 2,225 | 2,225 |
| chr10 | 2,201 | 2,201 |
| chr11 | 1,413 | 1,413 |
| chr12 | 1,519 | 1,519 |
| chr13 | 1,516 | 1,516 |
| chr14 | 2,418 | 2,418 |
| chr2 | 1,611 | 1,611 |
| chr3 | 1,984 | 1,984 |
| chr4 | 1,859 | 1,859 |
| chr5 | 2,015 | 2,015 |
| chr6 | 1,958 | 1,958 |
| chr7 | 2,052 | 2,052 |
| chr8 | 1,856 | 1,856 |
| chr9 | 1,798 | 1,798 |
| Others | 2,585 | 2,585 |
| Total | 29,010 | 29,010 |