- Scientific Name
- Populus davidiana
- Common Names
- Populus tremula var. davidiana
- Bioproject
- PRJCA033375
- Biosample
- SAMC4441715
- Accession No.
- GWHFILB00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Nanjing Forestry University, Nanjing Forestry University
- Contact
- liangjiao xue, lxue@njfu.edu.cn
- Sequence author(s)
- chengjin wen
- Released Date
- 2025-12-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- CANU v1.8
Pilon v1.23
Purge-dups v1.2.5
RaGOO v1.11 - Sequencing & coverage
- PacBio 340
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 406,370,123 |
| GC content | 34.23% |
| Chromosomes sequence No. | 4 |
| Genome sequence No. | 140 |
| Maximum genome sequence length (bp) | 54,959,560 |
| Minimum genome sequence length (bp) | 1,263 |
| Average genome sequence length (bp) | 2,902,644 |
| Genome sequence N50 (bp) | 20,971,900 |
| Genome sequence N90 (bp) | 13,910,271 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 7,056 | 7,056 |
| Others | 28,291 | 28,291 |
| Total | 35,347 | 35,347 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr16 | 1,251 | 1,251 |
| chr2 | 2,323 | 2,323 |
| chr5 | 2,172 | 2,172 |
| chr7 | 1,310 | 1,310 |
| Others | 28,291 | 28,291 |
| Total | 35,347 | 35,347 |