- Scientific Name
- Oryza rufipogon
- Common Names
- common wild rice, red rice;
- Bioproject
- PRJCA029102
- Haplotype bioproject
- PRJCA029062
- Biosample
- SAMC4069039
- Accession No.
- GWHFIPV00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Queensland Alliance for Agriculture and Food Innovation, The University of Queensland
- Contact
- Muhammad Abdullah, uqmabd13@uq.edu.au
- Sequence author(s)
- Muhammad Abdullah, Agnelo Furtado, Robert Henry
- Released Date
- 2025-01-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm v0.19.8
- Sequencing & coverage
- PacBio Sequel 126.5
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 410,488,348 |
| GC content | 44.16% |
| Chromosomes sequence No. | 12 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 32,704 | 32,704 |
| Total | 32,704 | 32,704 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,546 | 4,546 |
| chr10 | 1,830 | 1,830 |
| chr11 | 2,112 | 2,112 |
| chr12 | 1,919 | 1,919 |
| chr2 | 3,735 | 3,735 |
| chr3 | 4,011 | 4,011 |
| chr4 | 2,775 | 2,775 |
| chr5 | 2,464 | 2,464 |
| chr6 | 2,668 | 2,668 |
| chr7 | 2,587 | 2,587 |
| chr8 | 2,220 | 2,220 |
| chr9 | 1,837 | 1,837 |
| Total | 32,704 | 32,704 |