- Scientific Name
- Phlomoides rotata
- Common Names
- Lamiophlomis rotata
- Bioproject
- PRJCA032142
- Biosample
- SAMC4328591
- Accession No.
- GWHFIID00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Ecology and environment, Tibet University
- Contact
- Qiong La(lhagchong@163.com)
- Sequence author(s)
- zhongqiong Tian
- Released Date
- 2025-03-20
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm v0.16.1-r375
- Sequencing & coverage
- PacBio 42
ONT 40
Illumina 57 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 4,117,961,439 |
| GC content | 38.41% |
| Organellas sequence No. | 2 |
| Genome sequence No. | 24 |
| Maximum genome sequence length (bp) | 236,267,268 |
| Minimum genome sequence length (bp) | 151,803 |
| Average genome sequence length (bp) | 171,581,727 |
| Genome sequence N50 (bp) | 191,902,369 |
| Genome sequence N90 (bp) | 152,694,226 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Total | |
|---|---|---|---|---|---|
| Chloroplast | 15 | 26 | 0 | 21 | 62 |
| Mitochondrion | 13 | 13 | 0 | 17 | 43 |
| Others | 101,652 | 2,320 | 24 | 2,873 | 106,869 |
| Total | 101,680 | 2,359 | 24 | 2,911 | 106,974 |
Annotation Details
| ChrID | Protein | tRNA | rRNA | ncRNA | Total |
|---|---|---|---|---|---|
| Chloroplast | 15 | 26 | 0 | 21 | 62 |
| Mitochondrion | 13 | 13 | 0 | 17 | 43 |
| Others | 101,652 | 2,320 | 24 | 2,873 | 106,869 |
| Total | 101,680 | 2,359 | 24 | 2,911 | 106,974 |