- Scientific Name
- Zizania latifolia
- Common Names
- Zizania caduciflora
- Bioproject
- PRJCA027753
- Biosample
- SAMC4154869
- Accession No.
- GWHFKZZ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1352976
- GVM variations of the species
- -
- Submitter Organization
- Biodiversity Research Center, Wuhan Botanical Garden, Chinese Academy of Sciences
- Contact
- yan huang, huangyan22@mails.ucas.ac.cn
- Sequence author(s)
- yan huang
- Released Date
- 2025-02-12
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SOAPDENOVO2 r242
- Sequencing & coverage
- Pacbio Sequel II 47.86
Illumina NovaSeq 6000 37.61 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 596,302,815 |
| GC content | 43.19% |
| Chromosomes sequence No. | 17 |
| Genome sequence No. | 295 |
| Maximum genome sequence length (bp) | 51,816,019 |
| Minimum genome sequence length (bp) | 14,809 |
| Average genome sequence length (bp) | 2,021,365 |
| Genome sequence N50 (bp) | 34,137,687 |
| Genome sequence N90 (bp) | 23,728,140 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 35,676 | 35,676 |
| Others | 173 | 173 |
| Total | 35,849 | 35,849 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 3,176 | 3,176 |
| chr10 | 1,940 | 1,940 |
| chr11 | 1,776 | 1,776 |
| chr12 | 1,592 | 1,592 |
| chr13 | 1,603 | 1,603 |
| chr14 | 1,109 | 1,109 |
| chr15 | 1,593 | 1,593 |
| chr16 | 1,478 | 1,478 |
| chr17 | 1,192 | 1,192 |
| chr2 | 3,114 | 3,114 |
| chr3 | 2,751 | 2,751 |
| chr4 | 3,714 | 3,714 |
| chr5 | 2,715 | 2,715 |
| chr6 | 1,535 | 1,535 |
| chr7 | 1,791 | 1,791 |
| chr8 | 2,373 | 2,373 |
| chr9 | 2,224 | 2,224 |
| Others | 173 | 173 |
| Total | 35,849 | 35,849 |