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  • Rhipicephalus sanguineus
  • Rhipicephalus_sanguineus
    • Scientific Name
    Rhipicephalus sanguineus
    Common Names
    brown dog tick; Ixodes sanguineus
    Bioproject
    PRJCA002240
    Biosample
    SAMC136623
    Accession No.
    GWHAMMM00000000
    GWH reannotation accession
    -
    GSA raw reads
    -
    GVM variations of the species
    -
    Submitter Organization
    State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences
    Contact
    TIGMIC Group(tigmicgroup@gmail.com)
    Sequence author(s)
    TIGMIC Group
    Released Date
    2020-06-01
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    Canu;Falcon;Wtdbg;Smartdenovo V1.7;V1.0;V1.1.006;V1.0
    Sequencing & coverage
    Illumina HiSeqX-Ten 110.2
    PacBio 66.7
    Download
    DNA GFF RNA CDS Protein
    Reannotation Download
    -
    Publication(s)
    Na Jia, et al. Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Cell. 2020, 182(5): 1328-1340.e13.
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHAMMM00000000 - Rhipicephalus_sanguineus Draft genome in chromosome level 2020-06-01 DNA GFF RNA CDS Protein

    Statistics of Genome Assembly

    Genome size (bp) 2,365,540,023
    GC content 46.86%
    Organellas sequence No. 1
    Genome sequence No. 2,329
    Maximum genome sequence length (bp) 340,706,149
    Minimum genome sequence length (bp) 10,022
    Average genome sequence length (bp) 1,015,689
    Genome sequence N50 (bp) 208,696,187
    Genome sequence N90 (bp) 145,390,364
    Annotation of Whole Genome Assembly
    Protein Total
    Total 25,718 25,718