- Scientific Name
- Ixodes persulcatus
- Common Names
- taiga tick;
- Bioproject
- PRJCA002240
- Biosample
- SAMC187381
- Accession No.
- GWHAMMH00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences
- Contact
- TIGMIC Group, tigmicgroup@gmail.com
- Sequence author(s)
- TIGMIC Group
- Released Date
- 2020-06-25
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- Canu;Falcon;Wtdbg;Smartdenovo V1.7;V1.0;V1.1.006;V1.0
- Sequencing & coverage
- Illumina HiSeqX-Ten 62.3
PacBio 86.8 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Na Jia, et al. Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Cell. 2020, 182(5): 1328-1340.e13.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAMMH00000000 | - | Ixodes_persulcatus | Draft genome in contig level | 2020-05-29 |
DNA
|
| GWHAMMH00000000.1 | - | I.persulcatus.version.1.1 | Draft genome in contig level | 2020-06-25 |
DNA
GFF
RNA
CDS
Protein
|
Statistics of Genome Assembly
| Genome size (bp) | 1,901,640,799 |
| GC content | 45.98% |
| Organellas sequence No. | 1 |
| Contig sequence No. | 11,602 |
| Maximum contig sequence length (bp) | 4,902,843 |
| Minimum contig sequence length (bp) | 8,616 |
| Average contig sequence length (bp) | 163,906 |
| Contig N50 (bp) | 532,865 |
| Contig N90 (bp) | 51,824 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 28,574 | 28,574 |