- Scientific Name
- Nitrosopumilaceae archaeon
- Common Names
- -
- Bioproject
- PRJCA035250
- Biosample
- SAMC4661304
- Accession No.
- GWHFNDB00000000.1
- GWH reannotation accession
- GWHRA_FNDB00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of marine science, Sun Yat-sen University
- Contact
- Wei Xie(xiewei9@mail.sysu.edu.cn)
- Sequence author(s)
- Liping Qu
- Released Date
- 2025-07-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- metaSPAdes v3.15.5
megahit v1.2.9 - Sequencing & coverage
- DNBSEQ-T7 0.86
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFNDB00000000.1 | GWHRA_FNDB00000000.1 | SY21_MAG_5 | Draft genome in scaffold level | 2025-07-08 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,163,498 |
| GC content | 33.98% |
| Scaffold sequence No. | 154 |
| Maximum scaffold sequence length (bp) | 29,483 |
| Minimum scaffold sequence length (bp) | 1,595 |
| Average scaffold sequence length (bp) | 7,555 |
| Scaffold N50 (bp) | 11,548 |
| Scaffold N90 (bp) | 3,550 |
Statistics of Genome Assembly
| Genome size (bp) | 1,163,498 |
| GC content | 33.98% |
| Scaffold sequence No. | 154 |
| Maximum scaffold sequence length (bp) | 29,483 |
| Minimum scaffold sequence length (bp) | 1,595 |
| Average scaffold sequence length (bp) | 7,555 |
| Scaffold N50 (bp) | 11,548 |
| Scaffold N90 (bp) | 3,550 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,448 | 35 | 1 | 11 | 157 | 1,652 |