- Scientific Name
- Nitrosopumilaceae archaeon
- Common Names
- -
- Bioproject
- PRJCA035250
- Biosample
- SAMC4661330
- Accession No.
- GWHFNEB00000000.1
- GWH reannotation accession
- GWHRA_FNEB00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of marine science, Sun Yat-sen University
- Contact
- Wei Xie(xiewei9@mail.sysu.edu.cn)
- Sequence author(s)
- Liping Qu
- Released Date
- 2025-07-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- metaSPAdes v3.15.5
megahit v1.2.9 - Sequencing & coverage
- DNBSEQ-T7 1.21
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFNEB00000000.1 | GWHRA_FNEB00000000.1 | SY25_MAG_5 | Draft genome in scaffold level | 2025-07-08 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,133,954 |
| GC content | 34.01% |
| Scaffold sequence No. | 168 |
| Maximum scaffold sequence length (bp) | 38,586 |
| Minimum scaffold sequence length (bp) | 1,543 |
| Average scaffold sequence length (bp) | 6,750 |
| Scaffold N50 (bp) | 9,480 |
| Scaffold N90 (bp) | 3,005 |
Statistics of Genome Assembly
| Genome size (bp) | 1,133,954 |
| GC content | 34.01% |
| Scaffold sequence No. | 168 |
| Maximum scaffold sequence length (bp) | 38,586 |
| Minimum scaffold sequence length (bp) | 1,543 |
| Average scaffold sequence length (bp) | 6,750 |
| Scaffold N50 (bp) | 9,480 |
| Scaffold N90 (bp) | 3,005 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,400 | 33 | 1 | 3 | 171 | 1,608 |