- Scientific Name
- Nitrosopumilaceae archaeon
- Common Names
- -
- Bioproject
- PRJCA035250
- Biosample
- SAMC4662111
- Accession No.
- GWHFOIC00000000.1
- GWH reannotation accession
- GWHRA_FOIC00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of marine science, Sun Yat-sen University
- Contact
- Wei Xie(xiewei9@mail.sysu.edu.cn)
- Sequence author(s)
- Liping Qu
- Released Date
- 2025-07-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- metaSPAdes v3.15.5
megahit v1.2.9 - Sequencing & coverage
- DNBSEQ-T7 1.45
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFOIC00000000.1 | GWHRA_FOIC00000000.1 | SY72_MAG_13 | Draft genome in scaffold level | 2025-07-08 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,088,769 |
| GC content | 34.55% |
| Scaffold sequence No. | 265 |
| Maximum scaffold sequence length (bp) | 20,962 |
| Minimum scaffold sequence length (bp) | 1,004 |
| Average scaffold sequence length (bp) | 4,109 |
| Scaffold N50 (bp) | 5,773 |
| Scaffold N90 (bp) | 1,737 |
Statistics of Genome Assembly
| Genome size (bp) | 1,088,769 |
| GC content | 34.55% |
| Scaffold sequence No. | 265 |
| Maximum scaffold sequence length (bp) | 20,962 |
| Minimum scaffold sequence length (bp) | 1,004 |
| Average scaffold sequence length (bp) | 4,109 |
| Scaffold N50 (bp) | 5,773 |
| Scaffold N90 (bp) | 1,737 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,384 | 22 | 2 | 6 | 265 | 1,679 |