- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJCA032164
- Biosample
- SAMC4322721
- Accession No.
- GWHFPUM00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 90,901,492 (SNP), 12,087,428 (Indel)
- Submitter Organization
- Institute of Animal Sciences, Chinese Academy of Agricultural Sciences (CASA)
- Contact
- Wencheng Zong(zongzone@outlook.com)
- Sequence author(s)
- Wencheng Zong
- Released Date
- 2025-02-21
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- HiFisam v0.18.7
- Sequencing & coverage
- PacBio Sequel IIe 40
PromenthION 140
Illumina Novaseq 6000 100 - Download
- DNA
- Reannotation Download
- -
- Publication(s)
- Wencheng Zong, et al. Two telomere-to-telomere pig genome assemblies and pan-genome analyses provide insights into genomic structural landscape and genetic adaptations. iMeta. 2025.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHFPUM00000000.1 | - | T2T_RCpig1.0 | Draft genome in chromosome level | 2025-02-21 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,681,517,422 |
| GC content | 42.73% |
| Chromosomes sequence No. | 18 |
| Genome sequence No. | 107 |
| Maximum genome sequence length (bp) | 296,841,411 |
| Minimum genome sequence length (bp) | 12,662 |
| Average genome sequence length (bp) | 25,060,910 |
| Genome sequence N50 (bp) | 143,958,887 |
| Genome sequence N90 (bp) | 80,835,283 |