Genome Warehouse

Scientific Name: Bos taurus
Common Names: bovine, cow, dairy cow, domestic cattle, domestic cow, ox; cattle; Bos bovis, Bos primigenius taurus
Bioproject: PRJCA037127
Biosample: SAMC4847615
Accession No.: GWHFQSV00000000.1
GWH reannotation accession: -
GSA raw reads: -
GVM variations of the species: 53,609,957 (SNP), 6,724,343 (Indel)
Submitter Organization: Institute of Animal Husbandry and Veterinary Medicine, Jilin Academy of Agricultural Sciences
Contact: Yang Cao, caoyang003@163.com
Sequence author(s): Wenwen Fang
Released Date: 2025-03-25
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: hifiasm 0.19.8-r603
Trimmomatic 0.39
FastQC 0.11.9
bwa 2.2.1
Juicer 1.6
3D-DNA 190716
Sequencing & coverage: PacBio HiFi 38
Hi-C 122
Download: DNA GFF RNA CDS Protein
Publication(s): Wenwen Fang, et al. De novo genome assembly of Yanbian cattle using PacBio HiFi and Hi-C combined with RNA-seq data. Scientific Data. 2025, 12(1): 1399.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHFQSV00000000.1	-	YB_JAAS	Draft genome in chromosome level	2025-03-25	DNA GFF RNA CDS Protein

Genome size (bp)	2,924,347,159
GC content	42.74%
Chromosomes sequence No.	30
Genome sequence No.	79
Maximum genome sequence length (bp)	170,803,911
Minimum genome sequence length (bp)	22,609
Average genome sequence length (bp)	37,017,053
Genome sequence N50 (bp)	110,773,387
Genome sequence N90 (bp)	58,046,748

Annotation of Whole Genome Assembly

Annotation Details