- Scientific Name
- Cyprinus carpio
- Common Names
- carp, fancy carp, koi, mirror carp; common carp;
- Bioproject
- PRJCA037256
- Biosample
- SAMC4853006
- Accession No.
- GWHFQUJ00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- college of fisheries, Hunan Agricultural University
- Contact
- Zhe Li(lzyzy0515@163.com)
- Sequence author(s)
- Zhe Li
- Released Date
- 2025-07-10
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.5
- Sequencing & coverage
- Pacbio Revio 58.9
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 1,544,934,851 |
| GC content | 37.21% |
| Chromosomes sequence No. | 50 |
| Genome sequence No. | 189 |
| Maximum genome sequence length (bp) | 50,057,750 |
| Minimum genome sequence length (bp) | 2,000 |
| Average genome sequence length (bp) | 8,174,258 |
| Genome sequence N50 (bp) | 30,265,916 |
| Genome sequence N90 (bp) | 24,752,427 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 58,292 | 58,292 |
| Others | 161 | 161 |
| Total | 58,453 | 58,453 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr01A | 1,270 | 1,270 |
| chr01B | 1,360 | 1,360 |
| chr02A | 1,274 | 1,274 |
| chr02B | 1,377 | 1,377 |
| chr03A | 1,563 | 1,563 |
| chr03B | 2,027 | 2,027 |
| chr04A | 1,166 | 1,166 |
| chr04B | 1,180 | 1,180 |
| chr05A | 1,622 | 1,622 |
| chr05B | 1,585 | 1,585 |
| chr06A | 1,244 | 1,244 |
| chr06B | 1,282 | 1,282 |
| chr07A | 1,526 | 1,526 |
| chr07B | 1,591 | 1,591 |
| chr08A | 1,204 | 1,204 |
| chr08B | 1,283 | 1,283 |
| chr09A | 1,035 | 1,035 |
| chr09B | 1,080 | 1,080 |
| chr10A | 1,039 | 1,039 |
| chr10B | 1,070 | 1,070 |
| chr11A | 952 | 952 |
| chr11B | 1,009 | 1,009 |
| chr12A | 1,021 | 1,021 |
| chr12B | 981 | 981 |
| chr13A | 1,059 | 1,059 |
| chr13B | 1,128 | 1,128 |
| chr14A | 1,032 | 1,032 |
| chr14B | 1,028 | 1,028 |
| chr15A | 1,034 | 1,034 |
| chr15B | 1,118 | 1,118 |
| chr16A | 1,248 | 1,248 |
| chr16B | 1,389 | 1,389 |
| chr17A | 1,053 | 1,053 |
| chr17B | 1,080 | 1,080 |
| chr18A | 990 | 990 |
| chr18B | 972 | 972 |
| chr19A | 1,117 | 1,117 |
| chr19B | 1,174 | 1,174 |
| chr20A | 1,084 | 1,084 |
| chr20B | 1,191 | 1,191 |
| chr21A | 1,038 | 1,038 |
| chr21B | 1,159 | 1,159 |
| chr22A | 822 | 822 |
| chr22B | 1,238 | 1,238 |
| chr23A | 1,051 | 1,051 |
| chr23B | 1,074 | 1,074 |
| chr24A | 824 | 824 |
| chr24B | 840 | 840 |
| chr25A | 872 | 872 |
| chr25B | 936 | 936 |
| Others | 161 | 161 |
| Total | 58,453 | 58,453 |