- Scientific Name
- Rosa rugosa
- Common Names
- Japanese rose, Turkestan rose;
- Bioproject
- PRJCA016023
- Biosample
- SAMC4891360
- Accession No.
- GWHFSQF00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute of Grassland, Flowers and Ecology, Beijing Engineering Research Center of Functional Floriculture
- Contact
- Xi Cheng(chengxiswzx@163.com)
- Sequence author(s)
- Xi Cheng
- Released Date
- 2025-12-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- Pacbio hifi 37.71
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 468,877,209 |
| GC content | 39.50% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 154 |
| Maximum genome sequence length (bp) | 75,346,804 |
| Minimum genome sequence length (bp) | 16,613 |
| Average genome sequence length (bp) | 3,044,657 |
| Genome sequence N50 (bp) | 59,395,273 |
| Genome sequence N90 (bp) | 43,716,548 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 33,421 | 33,421 |
| Others | 3,568 | 3,568 |
| Total | 36,989 | 36,989 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,248 | 4,248 |
| chr2 | 4,807 | 4,807 |
| chr3 | 4,305 | 4,305 |
| chr4 | 3,708 | 3,708 |
| chr5 | 5,395 | 5,395 |
| chr6 | 6,318 | 6,318 |
| chr7 | 4,640 | 4,640 |
| Others | 3,568 | 3,568 |
| Total | 36,989 | 36,989 |