- Scientific Name
- Rosa rugosa
- Common Names
- Japanese rose, Turkestan rose;
- Bioproject
- PRJCA016023
- Biosample
- SAMC4891362
- Accession No.
- GWHFSQH00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute of Grassland, Flowers and Ecology, Beijing Engineering Research Center of Functional Floriculture
- Contact
- Xi Cheng(chengxiswzx@163.com)
- Sequence author(s)
- Xi Cheng
- Released Date
- 2025-12-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- hifiasm 0.16.1
- Sequencing & coverage
- Pacbio hifi 37.71
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 440,528,325 |
| GC content | 39.45% |
| Chromosomes sequence No. | 7 |
| Genome sequence No. | 99 |
| Maximum genome sequence length (bp) | 76,038,144 |
| Minimum genome sequence length (bp) | 22,389 |
| Average genome sequence length (bp) | 4,449,781 |
| Genome sequence N50 (bp) | 58,784,831 |
| Genome sequence N90 (bp) | 44,074,027 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,635 | 34,635 |
| Others | 1,930 | 1,930 |
| Total | 36,565 | 36,565 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,475 | 4,475 |
| chr2 | 5,129 | 5,129 |
| chr3 | 4,496 | 4,496 |
| chr4 | 3,663 | 3,663 |
| chr5 | 5,679 | 5,679 |
| chr6 | 6,532 | 6,532 |
| chr7 | 4,661 | 4,661 |
| Others | 1,930 | 1,930 |
| Total | 36,565 | 36,565 |