- Scientific Name
- Oryza sativa
- Common Names
- red rice, rice; Asian cultivated rice;
- Bioproject
- PRJCA038088
- Biosample
- SAMC4946132
- Accession No.
- GWHFWBB00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- CRR1720555
- GVM variations of the species
- 18,166,415 (SNP), 952,283 (Indel)
- Submitter Organization
- Rice Research Group, Coastal Agricultural Research Institute, Hebei Academy of Agriculture and Forestry Sciences
- Contact
- Lowry Geng(lowrygeng@163.com)
- Sequence author(s)
- Lowry Geng
- Released Date
- 2025-04-26
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- HiFiasm 0.19.5
Lachesis 3.0 - Sequencing & coverage
- Illumina HiSeq 2500 47.56
Illumina HiSeq 2500 117.33
Oxford Nanopore PromethION 48 47
PacBio Sequel II 51 - Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 384,274,281 |
| GC content | 43.57% |
| Chromosomes sequence No. | 11 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 55,129 | 55,129 |
| Others | 3,552 | 3,552 |
| Total | 58,681 | 58,681 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 7,083 | 7,083 |
| chr10 | 3,806 | 3,806 |
| chr11 | 3,976 | 3,976 |
| chr12 | 3,999 | 3,999 |
| chr2 | 5,785 | 5,785 |
| chr3 | 5,973 | 5,973 |
| chr4 | 5,718 | 5,718 |
| chr5 | 4,653 | 4,653 |
| chr6 | 5,013 | 5,013 |
| chr7 | 4,731 | 4,731 |
| chr8 | 4,392 | 4,392 |
| Others | 3,552 | 3,552 |
| Total | 58,681 | 58,681 |