- Scientific Name
- Ochotona curzoniae
- Common Names
- plateau pika; black-lipped pika; Ochotona curzonae
- Bioproject
- PRJCA000201
- Biosample
- SAMC003876
- Accession No.
- GWHABJX00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR004125, CRR004124
- GVM variations of the species
- -
- Submitter Organization
- 1. State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences
- Contact
- Dongming Xu(shuifeng.paper@aliyun.com)
- Sequence author(s)
- Dongming Xu
- Released Date
- 2020-01-13
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2013-07-09
- Sequencing & coverage
- Illumina HiSeq 2000 295.2
- Download
- DNA GFF RNA CDS Protein
- Reannotation Download
- -
- Publication(s)
- -
Statistics of Genome Assembly
| Genome size (bp) | 2,132,229,079 |
| GC content | 43.45% |
| Scaffold sequence No. | 5,141 |
| Maximum scaffold sequence length (bp) | 30,223,653 |
| Minimum scaffold sequence length (bp) | 2,000 |
| Average scaffold sequence length (bp) | 414,750 |
| Scaffold N50 (bp) | 5,894,203 |
| Scaffold N90 (bp) | 1,024,467 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 20,204 | 20,204 |