- Scientific Name
- Cervus nippon
- Common Names
- sika deer;
- Bioproject
- PRJCA001220
- Biosample
- SAMC055341
- Accession No.
- GWHANOY00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR078380
- GVM variations of the species
- -
- Submitter Organization
- Technology of omics reseach center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
- Contact
- Cheng Ai, aicheng@caas.cn
- Sequence author(s)
- Jue Ruan, Xiumei Xing, Cheng Ai
- Released Date
- 2021-09-28
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- wtdbg 1.1.006
- Sequencing & coverage
- PacBio 57.7
- Download
- DNA GFF RNA Protein
- Publication(s)
- Ranran Zhang, et al. Comparative antler proteome of sika deer from different developmental stages. Scientific Reports. 2021, 11.
Statistics of Genome Assembly
| Genome size (bp) | 2,500,646,934 |
| GC content | 41.62% |
| Genome sequence No. | 588 |
| Maximum genome sequence length (bp) | 143,481,735 |
| Minimum genome sequence length (bp) | 2,912 |
| Average genome sequence length (bp) | 4,252,801 |
| Genome sequence N50 (bp) | 78,786,809 |
| Genome sequence N90 (bp) | 49,061,596 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 21,449 | 21,449 |