- Scientific Name
- Mangifera indica
- Common Names
- mango;
- Bioproject
- PRJCA002248
- Biosample
- SAMC137342
- Accession No.
- GWHABLA00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- college of agriculture, South China Agricultural University
- Contact
- Wei Li, liweisdau@126.com
- Sequence author(s)
- Wei Li
- Released Date
- 2020-02-27
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Falcon version 0.3.0
- Sequencing & coverage
- PacBio 300.0
- Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Wei Li, et al. SMRT sequencing generates the chromosome-scale reference genome of tropical fruit mango, Mangifera indica. bioRxiv. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 371,620,806 |
| GC content | 32.61% |
| Chromosomes sequence No. | 20 |
| Genome sequence No. | 28 |
| Maximum genome sequence length (bp) | 27,760,119 |
| Minimum genome sequence length (bp) | 114,648 |
| Average genome sequence length (bp) | 13,272,172 |
| Genome sequence N50 (bp) | 18,777,690 |
| Genome sequence N90 (bp) | 13,631,091 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 34,162 | 34,162 |
| Others | 360 | 360 |
| Total | 34,522 | 34,522 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,527 | 1,527 |
| chr10 | 976 | 976 |
| chr11 | 2,357 | 2,357 |
| chr12 | 1,476 | 1,476 |
| chr13 | 1,712 | 1,712 |
| chr14 | 1,200 | 1,200 |
| chr15 | 1,498 | 1,498 |
| chr16 | 2,174 | 2,174 |
| chr17 | 1,012 | 1,012 |
| chr18 | 1,905 | 1,905 |
| chr19 | 2,573 | 2,573 |
| chr2 | 1,809 | 1,809 |
| chr20 | 1,564 | 1,564 |
| chr3 | 1,854 | 1,854 |
| chr4 | 2,304 | 2,304 |
| chr5 | 1,640 | 1,640 |
| chr6 | 1,114 | 1,114 |
| chr7 | 1,364 | 1,364 |
| chr8 | 1,858 | 1,858 |
| chr9 | 2,245 | 2,245 |
| Others | 360 | 360 |
| Total | 34,522 | 34,522 |