- Scientific Name
- Megadenia pygmaea
- Common Names
- Megadenia bardunovii, Megadenia speluncarum
- Bioproject
- PRJCA002905
- Biosample
- SAMC195361
- Accession No.
- GWHANWB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Sichuan University
- Contact
- Wenjie Yang, chuckxxy@163.com
- Sequence author(s)
- Wenjie Yang
- Released Date
- 2020-09-23
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- Canu 2.0
3D-DNA 180922 - Sequencing & coverage
- Nanopore 153.48
- Download
-
DNA
GFF
RNA
Protein
- Publication(s) -
Statistics of Genome Assembly
| Genome size (bp) | 215,165,330 |
| GC content | 37.19% |
| Chromosomes sequence No. | 6 |
| Genome sequence No. | 446 |
| Maximum genome sequence length (bp) | 40,658,464 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 482,433 |
| Genome sequence N50 (bp) | 34,800,961 |
| Genome sequence N90 (bp) | 27,136,519 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 24,826 | 24,826 |
| Others | 557 | 557 |
| Total | 25,383 | 25,383 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 4,188 | 4,188 |
| chr2 | 2,913 | 2,913 |
| chr3 | 3,608 | 3,608 |
| chr4 | 4,063 | 4,063 |
| chr5 | 4,610 | 4,610 |
| chr6 | 5,444 | 5,444 |
| Others | 557 | 557 |
| Total | 25,383 | 25,383 |