- Scientific Name
- Streptococcus pseudopneumoniae
- Common Names
- -
- Bioproject
- PRJCA035240
- Biosample
- SAMC5010274
- Accession No.
- GWHGDTD00000000.1
- GWH reannotation accession
- GWHRA_GDTD00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Microbial Resource, Institute of Microbiology, Chinese Academy of Sciences
- Contact
- zerui Wang, 672441216@qq.con
- Sequence author(s)
- zerui Wang
- Released Date
- 2025-06-01
- Assembly Level
- Draft genome in contig level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes v3.13.0
- Sequencing & coverage
- illum novaseq 6000 98.4
- Download
- DNA Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHGDTD00000000.1 | GWHRA_GDTD00000000.1 | Genome_result_A287 | Draft genome in contig level | 2025-06-01 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,181,573 |
| GC content | 39.71% |
| Contig sequence No. | 28 |
| Maximum contig sequence length (bp) | 379,816 |
| Minimum contig sequence length (bp) | 506 |
| Average contig sequence length (bp) | 77,913 |
| Contig N50 (bp) | 251,010 |
| Contig N90 (bp) | 78,589 |
Statistics of Genome Assembly
| Genome size (bp) | 2,181,573 |
| GC content | 39.71% |
| Contig sequence No. | 28 |
| Maximum contig sequence length (bp) | 379,816 |
| Minimum contig sequence length (bp) | 506 |
| Average contig sequence length (bp) | 77,913 |
| Contig N50 (bp) | 251,010 |
| Contig N90 (bp) | 78,589 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 2,007 | 45 | 8 | 70 | 42 | 2,172 |