- Scientific Name
- Sus scrofa
- Common Names
- pigs, swine, wild boar; pig;
- Bioproject
- PRJCA040723
- Biosample
- SAMC5161434
- Accession No.
- GWHGEEC00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 90,901,492 (SNP), 12,087,428 (Indel)
- Submitter Organization
- Shanghai Municipal Key Laboratory of Agri-Genetics and Breeding, Institute of Animal Husbandry & Veterinary Science, Shanghai Academy of Agricultural Sciences
- Contact
- Jun Gao, gaojun@saas.sh.cn
- Sequence author(s)
- Jun Gao
- Released Date
- 2025-12-31
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Hifiasm 0.19.8-r603
- Sequencing & coverage
- PacBio 36
- Download
- DNA
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHGEEC00000000.1 | - | PD_1 | Draft genome in chromosome level | 2025-12-31 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 2,681,158,835 |
| GC content | 42.62% |
| Chromosomes sequence No. | 20 |
| Genome sequence No. | 82 |
| Maximum genome sequence length (bp) | 290,069,328 |
| Minimum genome sequence length (bp) | 16,665 |
| Average genome sequence length (bp) | 32,697,059 |
| Genome sequence N50 (bp) | 143,780,168 |
| Genome sequence N90 (bp) | 70,771,410 |