- Scientific Name
- Limosilactobacillus reuteri
- Common Names
- Lactobacillus fermentum biotype II, Lactobacillus fermentum subsp. reuteri, Lactobacillus reuteri
- Bioproject
- PRJCA042243
- Biosample
- SAMC5544401
- Accession No.
- GWHGEKB00000000.1
- GWH reannotation accession
- GWHRA_GEKB00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Key Laboratory of Dairy Biotechnology and Engineering, IMAU
- Contact
- Heping Zhang(hepingdd@vip.sina.com)
- Sequence author(s)
- Yuexin Sun
- Released Date
- 2026-01-19
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- soapdenovo v2.04
- Sequencing & coverage
- Illumina Hiseq 2000 50
- Download
- DNA
- Reannotation Download
- Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein
- Publication(s)
- -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHGEKB00000000.1 | GWHRA_GEKB00000000.1 | SC78_5.hap1 | Draft genome in scaffold level | 2026-01-19 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation CDS Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,985,138 |
| GC content | 38.75% |
| Scaffold sequence No. | 270 |
| Maximum scaffold sequence length (bp) | 55,109 |
| Minimum scaffold sequence length (bp) | 204 |
| Average scaffold sequence length (bp) | 7,352 |
| Scaffold N50 (bp) | 15,139 |
| Scaffold N90 (bp) | 3,936 |
Statistics of Genome Assembly
| Genome size (bp) | 1,985,138 |
| GC content | 38.75% |
| Scaffold sequence No. | 270 |
| Maximum scaffold sequence length (bp) | 55,109 |
| Minimum scaffold sequence length (bp) | 204 |
| Average scaffold sequence length (bp) | 7,352 |
| Scaffold N50 (bp) | 15,139 |
| Scaffold N90 (bp) | 3,936 |
Annotation of Whole Genome Assembly
| Protein | tRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,937 | 46 | 1 | 103 | 301 | 2,388 |