- Scientific Name
- Hippophae rhamnoides
- Common Names
- sallowthorn, sea buckthorn, sea-buckthorn; Elaeagnus rhamnoides
- Bioproject
- PRJCA042536
- Biosample
- SAMC5600866
- Accession No.
- GWHGEPM00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Environment and Resources, Dalian Minzu University
- Contact
- Yuhui Hong, yhhong@dlnu.edu.cn
- Sequence author(s)
- Chengjiang Ruan
- Released Date
- 2025-12-19
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- AllHiC 43682
- Sequencing & coverage
- Illumia 100
PacBio 100
Hi-C 100 - Download
- DNA GFF RNA CDS Protein
- Publication(s)
- Siyang Zhao, et al. Discovery of Hub Genes Involved in Seed Development and Lipid Biosynthesis in Sea Buckthorn (Hippophae rhamnoides L.) Using UID Transcriptome Sequencing. Plants (Basel). 2025, 14(15).
Statistics of Genome Assembly
| Genome size (bp) | 1,276,329,565 |
| GC content | 29.37% |
| Chromosomes sequence No. | 12 |
| Genome sequence No. | 812 |
| Maximum genome sequence length (bp) | 155,600,785 |
| Minimum genome sequence length (bp) | 7,346 |
| Average genome sequence length (bp) | 1,571,834 |
| Genome sequence N50 (bp) | 99,722,828 |
| Genome sequence N90 (bp) | 73,139,850 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 25,224 | 25,224 |
| Others | 491 | 491 |
| Total | 25,715 | 25,715 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chr1 | 1,953 | 1,953 |
| chr10 | 2,500 | 2,500 |
| chr11 | 2,004 | 2,004 |
| chr12 | 2,228 | 2,228 |
| chr2 | 2,175 | 2,175 |
| chr3 | 1,723 | 1,723 |
| chr4 | 3,090 | 3,090 |
| chr5 | 1,554 | 1,554 |
| chr6 | 1,970 | 1,970 |
| chr7 | 3,066 | 3,066 |
| chr8 | 1,468 | 1,468 |
| chr9 | 1,493 | 1,493 |
| Others | 491 | 491 |
| Total | 25,715 | 25,715 |